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Summarising the pairwise ANI, AAI and estimated DDH values of the S . <t> somaliensis </t> and S . sudanensis type strain genomes compared to genomes in GTDB. Species thresholds are usually defined by ANI >95%, AAI >95% and DDH >70%. Values that fall below these thresholds are highlighted in grey. Results indicate that GTDB GCF_000258695 (annotated as S . <t> somaliensis </t> ) is most closely related to S . sudanensis , though it is a different species.
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Summarising the pairwise ANI, AAI and estimated DDH values of the S . somaliensis and S . sudanensis type strain genomes compared to genomes in GTDB. Species thresholds are usually defined by ANI >95%, AAI >95% and DDH >70%. Values that fall below these thresholds are highlighted in grey. Results indicate that GTDB GCF_000258695 (annotated as S . somaliensis ) is most closely related to S . sudanensis , though it is a different species.

Journal: PLoS Neglected Tropical Diseases

Article Title: Systematic whole-genome sequencing reveals an unexpected diversity among actinomycetoma pathogens and provides insights into their antibacterial susceptibilities

doi: 10.1371/journal.pntd.0010128

Figure Lengend Snippet: Summarising the pairwise ANI, AAI and estimated DDH values of the S . somaliensis and S . sudanensis type strain genomes compared to genomes in GTDB. Species thresholds are usually defined by ANI >95%, AAI >95% and DDH >70%. Values that fall below these thresholds are highlighted in grey. Results indicate that GTDB GCF_000258695 (annotated as S . somaliensis ) is most closely related to S . sudanensis , though it is a different species.

Article Snippet: Type strains of S . somaliensis (DSM 40738) and S . sudanensis (DSM 41923) were acquired from DSMZ.

Techniques:

Summarising the pairwise ANI, AAI and estimated DDH values between isolates and their nearest relatives with sequenced genomes. S . somaliensis and S . sundanensis type strain genomes are compared to genomes in GTDB. Values that fall below defined thresholds for assigning strains to the same species are highlighted in grey.

Journal: PLoS Neglected Tropical Diseases

Article Title: Systematic whole-genome sequencing reveals an unexpected diversity among actinomycetoma pathogens and provides insights into their antibacterial susceptibilities

doi: 10.1371/journal.pntd.0010128

Figure Lengend Snippet: Summarising the pairwise ANI, AAI and estimated DDH values between isolates and their nearest relatives with sequenced genomes. S . somaliensis and S . sundanensis type strain genomes are compared to genomes in GTDB. Values that fall below defined thresholds for assigning strains to the same species are highlighted in grey.

Article Snippet: Type strains of S . somaliensis (DSM 40738) and S . sudanensis (DSM 41923) were acquired from DSMZ.

Techniques:

Assembly statistics for all isolate genomes sequenced in this project. The genomes from these assemblies are available under NCBI Bioproject PRJNA782605.

Journal: PLoS Neglected Tropical Diseases

Article Title: Systematic whole-genome sequencing reveals an unexpected diversity among actinomycetoma pathogens and provides insights into their antibacterial susceptibilities

doi: 10.1371/journal.pntd.0010128

Figure Lengend Snippet: Assembly statistics for all isolate genomes sequenced in this project. The genomes from these assemblies are available under NCBI Bioproject PRJNA782605.

Article Snippet: Type strains of S . somaliensis (DSM 40738) and S . sudanensis (DSM 41923) were acquired from DSMZ.

Techniques:

The mean genome size for the genus is 8.45Mb. The genomes of all S . sudanensis and S . somaliensis related isolates are amongst the smallest genomes in the genus.

Journal: PLoS Neglected Tropical Diseases

Article Title: Systematic whole-genome sequencing reveals an unexpected diversity among actinomycetoma pathogens and provides insights into their antibacterial susceptibilities

doi: 10.1371/journal.pntd.0010128

Figure Lengend Snippet: The mean genome size for the genus is 8.45Mb. The genomes of all S . sudanensis and S . somaliensis related isolates are amongst the smallest genomes in the genus.

Article Snippet: Type strains of S . somaliensis (DSM 40738) and S . sudanensis (DSM 41923) were acquired from DSMZ.

Techniques:

Initial clinical classification of isolates compared to the molecular taxonomic assignments.

Journal: PLoS Neglected Tropical Diseases

Article Title: Systematic whole-genome sequencing reveals an unexpected diversity among actinomycetoma pathogens and provides insights into their antibacterial susceptibilities

doi: 10.1371/journal.pntd.0010128

Figure Lengend Snippet: Initial clinical classification of isolates compared to the molecular taxonomic assignments.

Article Snippet: Type strains of S . somaliensis (DSM 40738) and S . sudanensis (DSM 41923) were acquired from DSMZ.

Techniques: Histopathology